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Commit a36938b9 authored by Jean du Preez's avatar Jean du Preez
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Merge branch 'configs' into 'main'

cleaned up configs and readme

See merge request mmbees-git/wrf_chem_for_palm!20
parents f7a1ad3e 7ce58467
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1 merge request!20cleaned up configs and readme
......@@ -71,13 +71,12 @@ vinterp_terrain_smoothing
interp_dir_name file path to interpolated files
wrfchem_spec wrf-chem chemical species to be included in dynamic driver, list
of species: no, no2, no3, pm10, PM2_5_DRY, o3, co, hno3, ho, h2o2, nh3
("no")
of gaseous species: no, no2, no3, pm10, PM2_5_DRY, o3, co, hno3, ho, h2o2, nh3
aerosol_wrfchem True means aerosols are included, (False)
wrfchem_bin_limits wrf-chem aerosol siz bins ([3.9e-8, 1.56e-7, 6.25e-7, 2.5e-6, 1.0e-5])
listspec PALM aerosol species, only aerosols,
options listspec = ['SO4', 'OC', 'BC', 'DU', 'SS', 'NH', 'NO'] ("SO4")
options listspec = ['SO4', 'OC', 'BC', 'DU', 'SS', 'NH', 'NO']
nbin SALSA parameter, # size bins in subrange ([1,7])
reglim SALSA parameter, subrange limits ([3.9e-8, 5.0e-8, 2.5e-6])
nf2a SALSA parameter, insoluble fraction, currently only soluble supported
......@@ -106,12 +105,6 @@ origin_z origin of the domain in the vertical direction
-Interpolated files are saved to a different directory than the wrf-chem data files
-A variety of chemical species can be inlcuded.
-Aerosols can be included and are weighted based on specified aerosol size bins
# Latest update (March/April 2022)
-Any chemical specie from wrf-chem can be selected in the configuration file and will be
included in the dynamic driver.
-Extensive changes were made to palm_dynamic_output and palm_dynamic_config to accomdate
the changes above.
-Resolved issue: missing horizontal interpolation of chemical species has been resolved.
-Default setting revised.
-Base state temperature corrected to 290.
-Base state temperature corrected to 290. for WRFChem
-Changes to palm_dynamic_output were made to include the various aerosol and chemical
species
File added
# Test case for developing WRF-CHEM for PALM
# see GMD: https://doi.org/10.5194/gmd-2020-175
# PALM case, domain, and configuration parameters
domain = 'augsburg'
resolution = '10'
scenario = 'validation_summer'
nested_domain = False
# dynamic driver output
dynamic_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/augs12/INPUT/augs12_dynamic"
# import grid parameters for dynamic driver from static driver
grid_from_static = True
# static driver input
static_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/augs12/INPUT/augs12_static"
# reference coordinate system of PALM simulation
proj_palm = "EPSG:32633"
# projection lon-lat
proj_wgs84 = 'EPSG:4326'
# vertical grid
dz = 10.0
nz = 80 # z in grids
dz_stretch_level = 900.0 # in meters
dz_stretch_factor = 1.0
dz_max = 20.0
# time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
origin_time = "2021-09-27 12:00:00"
simulation_hours = 3
# wrf_chem input dir and mask
wrf_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data'
wrf_file_mask = "wrfout_d01_*"
wrf_hybrid_levs = True
vinterp_terrain_smoothing = None
# interpolated files
interp_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data/interp'
# WRF-chem gaseous species
wrfchem_spec = ['no', 'no2','hno3', 'nh3', 'h2so4', 'ocnv','ocsv']
# Salsa parameters (only aerosol species)
aerosol_wrfchem = True
wrfchem_bin_limits = [3.9e-8, 1.56e-7, 6.25e-7, 2.5e-6, 1.0e-5]
listspec = ['OC', 'NH', 'NO']
nbin = [1,7]
reglim = [3.9e-8, 5.0e-8, 2.5e-6]
nf2a = 1.0
# radiation
radiation_from_wrf = False
wrf_rad_file_mask = "auxhist6_*"
radiation_smoothing_distance = 10000.0
# Test case for developing WRF-CHEM for PALM
# see GMD: https://doi.org/10.5194/gmd-2020-175
# Configuration file for using WRFChem to create a dynamic driver for PALM
# Based on configuration file from GMD: https://doi.org/10.5194/gmd-2020-175
# PALM case, domain, and configuration parameters
domain = 'inner'
......@@ -7,54 +7,53 @@ resolution = '2'
scenario = 'city_test'
nested_domain = False
# dynamic driver output
# Dynamic driver output directory and filename
dynamic_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/inner_city/INPUT/inner_city_dynamic"
# import grid parameters for dynamic driver from static driver
# Import grid parameters for dynamic driver from static driver
grid_from_static = True
# static driver input
# Static driver input directory and filename
static_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/inner_city/INPUT/inner_city_static"
# reference coordinate system of PALM simulation
# Reference coordinate system of PALM simulation
proj_palm = "EPSG:32633"
# projection lon-lat
# Projection lon-lat
proj_wgs84 = 'EPSG:4326'
# vertical grid
# Vertical grid resolution
dz = 2.0
nz = 60 # z in grids
dz_stretch_level = 3000.0 # in meters
dz_stretch_factor = 1.00
dz_max = 10.0
# time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
# Time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
origin_time = "2022-03-16 06:00:00"
simulation_hours = 1
# wrf_chem input dir and mask
# Directory for wrf_chem input data and mask
wrf_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data'
wrf_file_mask = "wrfout_d01_2022*"
wrf_hybrid_levs = False
vinterp_terrain_smoothing = None
# interpolated files
# Directory for interpolated files
interp_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data/interp'
# WRF-chem gaseous species
# If salsa is used, h2so4, hno3, nh3, ocnv, ocsv must be included
#wrfchem_spec = ['no', 'no2']
# Some other possible species: 'no', 'no2'
wrfchem_spec = ['h2so4','hno3','nh3','ocnv','ocsv']
# Salsa parameters (only aerosol species)
# Salsa parameters and aerosol size bins
aerosol_wrfchem = True
wrfchem_bin_limits = [3.9e-8, 1.56e-7, 6.25e-7, 2.5e-6, 1.0e-5]
nbin = [1,7]
reglim = [3.9e-8, 5.0e-8, 2.5e-6]
nf2a = 1.0
# Either SO4 or OC must be included in listspec
# Either SO4 or OC must be included in listspec (aerosol species only)
listspec = ['DU','SO4', 'OC','BC','SS','NH','NO']
# radiation
# Radiation files
radiation_from_wrf = False
wrf_rad_file_mask = "auxhist6_*"
radiation_smoothing_distance = 10000.0
# Test case for developing WRF-CHEM for PALM
# see GMD: https://doi.org/10.5194/gmd-2020-175
# PALM case, domain, and configuration parameters
domain = 'lands'
resolution = '100'
scenario = 'rans_test'
nested_domain = False
# dynamic driver output
dynamic_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/lands/INPUT/lands_dynamic"
# import grid parameters for dynamic driver from static driver
grid_from_static = True
# static driver input
static_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/lands/INPUT/lands_static"
# reference coordinate system of PALM simulation
proj_palm = "EPSG:32633"
# projection lon-lat
proj_wgs84 = 'EPSG:4326'
# vertical grid
dz = 10.0
nz = 80 # z in grids
dz_stretch_level = 3000.0 # in meters
dz_stretch_factor = 1.00
dz_max = 10.0
# time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
origin_time = "2022-03-16 06:00:00"
simulation_hours = 3
# wrf_chem input dir and mask
wrf_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data'
wrf_file_mask = "wrfout_d01_2022*"
wrf_hybrid_levs = False
vinterp_terrain_smoothing = None
# interpolated files
interp_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data/interp'
# WRF-chem gaseous species
# If salsa is used, h2so4, hno3, nh3, ocnv, ocsv must be included
#wrfchem_spec = ['no', 'no2']
wrfchem_spec = ['h2so4','hno3','nh3','ocnv','ocsv']
# Salsa parameters (only aerosol species)
aerosol_wrfchem = True
wrfchem_bin_limits = [3.9e-8, 1.56e-7, 6.25e-7, 2.5e-6, 1.0e-5]
nbin = [1,7]
reglim = [3.9e-8, 5.0e-8, 2.5e-6]
nf2a = 1.0
# Either SO4 or OC must be included in listspec
listspec = ['DU', 'SO4']
#listspec = ['DU','SO4', 'OC','BC','SS','NH','NO']
# radiation
radiation_from_wrf = False
wrf_rad_file_mask = "auxhist6_*"
radiation_smoothing_distance = 10000.0
# Test case for developing WRF-CHEM for PALM
# see GMD: https://doi.org/10.5194/gmd-2020-175
# PALM case, domain, and configuration parameters
domain = 'mbees'
resolution = '10'
scenario = 'city_test'
nested_domain = False
# dynamic driver output
dynamic_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/augs_test/INPUT/augs_test_dynamic"
# import grid parameters for dynamic driver from static driver
grid_from_static = True
# static driver input
static_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/augs_test/INPUT/augs_test_static"
# reference coordinate system of PALM simulation
proj_palm = "EPSG:32633"
# projection lon-lat
proj_wgs84 = 'EPSG:4326'
# vertical grid
dz = 10.0
nz = 80 # z in grids
dz_stretch_level = 3000.0 # in meters
dz_stretch_factor = 1.00
dz_max = 10.0
# time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
origin_time = "2022-03-16 06:00:00"
simulation_hours = 1
# wrf_chem input dir and mask
wrf_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data'
wrf_file_mask = "wrfout_d01_2022*"
wrf_hybrid_levs = False
vinterp_terrain_smoothing = None
# interpolated files
interp_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data/interp'
# WRF-chem gaseous species
# If salsa is used, h2so4, hno3, nh3, ocnv, ocsv must be included
#wrfchem_spec = ['no', 'no2']
wrfchem_spec = ['h2so4','hno3','nh3','ocnv','ocsv']
# Salsa parameters (only aerosol species)
aerosol_wrfchem = True
wrfchem_bin_limits = [3.9e-8, 1.56e-7, 6.25e-7, 2.5e-6, 1.0e-5]
nbin = [1,7]
reglim = [3.9e-8, 5.0e-8, 2.5e-6]
nf2a = 1.0
# Either SO4 or OC must be included in listspec
listspec = ['DU', 'SO4']
#listspec = ['DU','SO4', 'OC','BC','SS','NH','NO']
# radiation
radiation_from_wrf = False
wrf_rad_file_mask = "auxhist6_*"
radiation_smoothing_distance = 10000.0
# Test case for developing WRF-CHEM for PALM
# see GMD: https://doi.org/10.5194/gmd-2020-175
# Configuration file for using WRFChem to create a dynamic driver for PALM
# Based on configuration file from GMD: https://doi.org/10.5194/gmd-2020-175
# PALM case, domain, and configuration parameters
domain = 'mbees'
......@@ -7,55 +7,53 @@ resolution = '10'
scenario = 'les_test'
nested_domain = False
# dynamic driver output
# Dynamic driver output directory and filename
dynamic_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/augs3_1_3/INPUT/augs3_1_dynamic_12hr"
# import grid parameters for dynamic driver from static driver
# Import grid parameters for dynamic driver from static driver
grid_from_static = True
# static driver input
# Static driver input directory and filename
static_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/augs3_1_3/INPUT/augs3_1_3_static"
# reference coordinate system of PALM simulation
# Reference coordinate system of PALM simulation
proj_palm = "EPSG:32633"
# projection lon-lat
# Projection lon-lat
proj_wgs84 = 'EPSG:4326'
# vertical grid
# Vertical grid
dz = 10.0
nz = 192 # z in grids
dz_stretch_level = 3000.0 # in meters
dz_stretch_factor = 1.00
dz_max = 10.0
# time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
# Time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
origin_time = "2022-03-16 06:00:00"
simulation_hours = 12
# wrf_chem input dir and mask
# Directory for wrf_chem input data and mask
wrf_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data'
wrf_file_mask = "wrfout_d01_2022*"
wrf_hybrid_levs = False
vinterp_terrain_smoothing = None
# interpolated files
# Directory for interpolated files
interp_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data/interp'
# WRF-chem gaseous species
# If salsa is used, h2so4, hno3, nh3, ocnv, ocsv must be included
#wrfchem_spec = ['no', 'no2']
# Some other possible species: 'no', 'no2'
wrfchem_spec = ['h2so4','hno3','nh3','ocnv','ocsv']
# Salsa parameters (only aerosol species)
# Salsa parameters and aerosol size bins
aerosol_wrfchem = True
wrfchem_bin_limits = [3.9e-8, 1.56e-7, 6.25e-7, 2.5e-6, 1.0e-5]
nbin = [1,7]
reglim = [3.9e-8, 5.0e-8, 2.5e-6]
nf2a = 1.0
# Either SO4 or OC must be included in listspec
listspec = ['DU', 'SO4']
#listspec = ['DU','SO4', 'OC','BC','SS','NH','NO']
# Either SO4 or OC must be included in listspec (aerosol species only)
listspec = ['DU','SO4', 'OC','BC','SS','NH','NO']
# radiation
# Radiation
radiation_from_wrf = False
wrf_rad_file_mask = "auxhist6_*"
radiation_smoothing_distance = 10000.0
# Test case for developing WRF-CHEM for PALM
# see GMD: https://doi.org/10.5194/gmd-2020-175
# Configuration file for using WRFChem to create a dynamic driver for PALM
# Based on configuration file from GMD: https://doi.org/10.5194/gmd-2020-175
# PALM case, domain, and configuration parameters
domain = 'mbees'
......@@ -7,55 +7,54 @@ resolution = '100'
scenario = 'rans_test'
nested_domain = False
# dynamic driver output
# Dynamic driver output directory and filename
dynamic_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/mbees/mbees_dynamic12hr"
# import grid parameters for dynamic driver from static driver
# Import grid parameters for dynamic driver from static driver
grid_from_static = True
# static driver input
# Static driver input directory and filename
static_driver_file = "/cfs/home/d/u/dupreeda/MBEES/PALM/palm_model_system-v21.10/JOBS/mbees/mbees_static"
# reference coordinate system of PALM simulation
# Reference coordinate system of PALM simulation
proj_palm = "EPSG:32633"
# projection lon-lat
# Projection lon-lat
proj_wgs84 = 'EPSG:4326'
# vertical grid
# Vertical grid resolution
dz = 10.0
nz = 120 # z in grids
dz_stretch_level = 3000.0 # in meters
dz_stretch_factor = 1.00
dz_max = 10.0
# time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
# Time origin and extent of the simulation (format YYYY-MM-DD hh:mm:ss)
origin_time = "2022-03-16 06:00:00"
simulation_hours = 12
# wrf_chem input dir and mask
# Directory for wrf_chem input data and mask
wrf_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data'
wrf_file_mask = "wrfout_d01_2022*"
wrf_hybrid_levs = False
vinterp_terrain_smoothing = None
# interpolated files
# Directory for interpolated files
interp_dir_name = '/cfs/home/d/u/dupreeda/MBEES/PALM/wrf_chem_data/interp'
# WRF-chem gaseous species
# If salsa is used, h2so4, hno3, nh3, ocnv, ocsv must be included
#wrfchem_spec = ['no', 'no2']
# Some other possible species: 'no', 'no2'
wrfchem_spec = ['h2so4','hno3','nh3','ocnv','ocsv']
# Salsa parameters (only aerosol species)
# Salsa parameters and aerosol size bins
aerosol_wrfchem = True
wrfchem_bin_limits = [3.9e-8, 1.56e-7, 6.25e-7, 2.5e-6, 1.0e-5]
nbin = [1,7]
reglim = [3.9e-8, 5.0e-8, 2.5e-6]
nf2a = 1.0
# Either SO4 or OC must be included in listspec
listspec = ['DU', 'SO4']
#listspec = ['DU','SO4', 'OC','BC','SS','NH','NO']
# Either SO4 or OC must be included in listspec (aerosol species only)
listspec = ['DU','SO4', 'OC','BC','SS','NH','NO']
# radiation
# Radiation files
radiation_from_wrf = False
wrf_rad_file_mask = "auxhist6_*"
radiation_smoothing_distance = 10000.0
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