Updates to make restbox working again.

boxmox/__init__.py

@@ -8,7 +8,7 @@ if work_path is None:
     import warnings
     warnings.warn("BOXMOX unusable - experiment execution disabled.")
 else:
-    from experiment import Experiment, ExperimentFromExample, ExperimentFromExistingRun, Namelist, examples
+    from experiment import Experiment, ExperimentFromExample, ExperimentFromExistingRun, Namelist, examples, compiledMechs
 
 try:
     import matplotlib

boxmox/experiment.py

@@ -33,7 +33,11 @@ class ExampleData:
         self.path = path
         self.files = { x.replace(".csv", ""): os.path.join(self.path, x) for x in os.listdir(self.path) if '.csv' in x }
 
-examples = { x: ExampleData(os.path.join(examplesPath, x)) for x in os.listdir(examplesPath) if os.path.isdir( os.path.join(examplesPath, x))}
+examples = { x: ExampleData(os.path.join(examplesPath, x)) for x in os.listdir(examplesPath) if os.path.isdir( os.path.join(examplesPath, x) ) }
+
+compiledMechsPath=os.path.join(os.environ['KPP_HOME'], "boxmox", "compiled_mechs")
+
+compiledMechs = [ x for x in os.listdir(compiledMechsPath) if (os.path.isdir( os.path.join(compiledMechsPath, x) )) and ("_adjoint" not in x) ]
 
 class Namelist:
     '''
@@ -300,6 +304,8 @@ class ExperimentFromExample(Experiment):
         self.namelist = Namelist(os.path.join(self.path, 'BOXMOX.nml'))
         self.mechanism = self._get_mechanism()
 
+        self.version  = self._determineVersion(self.path)
+
     def __new(self):
         try:
             s.check_output(["new_BOXMOX_experiment_from_example", "-f", self.example, self.path], stderr=s.STDOUT)
@@ -336,8 +342,11 @@ class ExperimentFromExistingRun(Experiment):
         self.namelist = Namelist(os.path.join(self.path, 'BOXMOX.nml'))
         self.mechanism = self._get_mechanism()
 
+        self.version  = self._determineVersion(self.path)
+
         self._populateInput()
         self._populateOutput(filename=filename)
 
 
 
+