Updated CI scripts

.gitignore

 bin/
 share
 build
+src/kpp
+boxmox*.tar.gz
 
 doc/boxmox_README.pdf
 

.gitlab-ci.yml

-create_patch:
-  image: ubuntu:rolling
-  script:
-    - bash create_BOXMOX_patch.bash
-  tags:
-    - ehs_vm
-
-boxmox_latest:
+build:
   image: ubuntu:rolling
+  before_script:
+    - DEBIAN_FRONTEND=noninteractive apt-get -qq update
+    - DEBIAN_FRONTEND=noninteractive apt-get -qq install wget patch make gcc gfortran flex bison texlive
   script:
-    - cp -r boxmox boxmox_latest
-    - bash prep_BOXMOX_src_directory.bash boxmox_latest latest
-    - tar cvzf boxmox_latest.tar.gz boxmox_latest
-  tags:
-    - ehs_vm
+    - aclocal
+    - autoconf
+    - automake -a -c
+    - ./configure
+    - make
+    - make dist-gzip
   artifacts:
     paths:
       - boxmox_latest.tar.gz
-
-.compile:
-  script:
-    - bash install_BOXMOX.bash COMPILE_ONLY
-    - export KPP_HOME=$(pwd)/boxmox
-    - export PATH=$KPP_HOME/bin:$KPP_HOME/boxmox/bin:$PATH
-    - cd boxmox/models
-    - prepare_BOXMOX_mechanism MOZART_4
-    - new_BOXMOX_experiment_from_example chamber_experiment
-    - for mechpath in *def;
-      do
-        mech=${mechpath/.def/};
-        echo ${mech};
-        if [ "${mech}" != "CB05TUCl_EPA" ] && [ "${mech}" != "MCMv3_3" ];
-        then
-          prepare_BOXMOX_mechanism -f ${mech};
-          new_BOXMOX_experiment ${mech} chamber_experiment_${mech};
-          cp chamber_experiment/*csv chamber_experiment_${mech}/;
-          cd chamber_experiment_${mech};
-          ./${mech}.exe;
-          cd ..;
-        fi;
-      done
-  tags:
-    - ehs_vm
-
-compile_ubuntu_latest:
-  image: ubuntu:rolling
-  extends: .compile
-  before_script:
-    - DEBIAN_FRONTEND=noninteractive apt-get -qq update
-    - DEBIAN_FRONTEND=noninteractive apt-get -qq install wget patch make gcc gfortran flex bison texlive
-  tags:
-    - ehs_vm
-