From 1cbf6228de134c9bf299100aa5d04b00eec4b855 Mon Sep 17 00:00:00 2001
From: Christoph Knote <christoph.knote@med.uni-augsburg.de>
Date: Fri, 23 Sep 2022 09:13:17 +0200
Subject: [PATCH] Do not ignore profile.bash recursively

---
 .gitignore                               |  2 +-
 machine_profiles/alcc_spack/profile.bash | 25 ++++++++++++++++++++++++
 2 files changed, 26 insertions(+), 1 deletion(-)
 create mode 100644 machine_profiles/alcc_spack/profile.bash

diff --git a/.gitignore b/.gitignore
index 313c07a..056cde5 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,3 @@
-profile.bash
+./profile.bash
 **.DS_Store
 **/__pycache__
\ No newline at end of file
diff --git a/machine_profiles/alcc_spack/profile.bash b/machine_profiles/alcc_spack/profile.bash
new file mode 100644
index 0000000..8b294f6
--- /dev/null
+++ b/machine_profiles/alcc_spack/profile.bash
@@ -0,0 +1,25 @@
+# --- Modules and other things ---
+
+module load wrf wrf-chem wps nco netcdf-c netcdf-fortran anthro_emis fire_emis megan_bio_emiss mozbc wesely-exo_coldens python gdal py-requests py-cdsapi py-cartopy py-matplotlib py-netcdf4 py-numpy py-pyproj py-rasterio py-scipy py-shapely py-simplekml py-xarray py-pyshp py-pandas
+
+ulimit -s unlimited
+
+# --- MPI settings ---
+
+mpiCommandPre="mpirun /usr/bin/time -v"
+mpiCommandMain="mpirun -mca pml ucx -mca coll ^hcoll -x UCX_TLS=tcp,shm -x UCX_NET_DEVICES=eth5 /usr/bin/time -v"
+mpiCommandReal=${mpiCommandPre}
+
+# --- Batch system ---
+
+# argument to submit a job in a held state
+batchHoldArgument="--hold"
+# command to release a held job
+batchReleaseCommand="scontrol release"
+# command to submit jobs to the queueing system
+batchSubmitCommand=sbatch
+# dependency argument for chaining runs upon submission
+batchDepArgument="--dependency=afterok:__id__"
+# sed command ("used as s/__command/\1/") to retrieve job run PID upon
+# submission with $batchSubmitCommand
+batchPidSedCommand="Submitted batch job \(.*\)"
-- 
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